MESIROV LAB


JILL P. MESIROV, Ph.D.

Distinguished Professor and Senior Vice President for Computational Science
Sanford Burnham Prebys Discovery Institute

Jill Mesirov is a computational scientist who has spent many years working in the area of high-performance computing on problems that arise in science, engineering, and business applications. Her research focuses on cancer genomics applying machine-learning methods to functional data derived from patient tumors. The lab analyzes this molecular data to determine the underlying biological mechanisms of specific tumor subtypes, to stratify patients according to their relative risks of relapse, and to identify candidate treatments. In addition, Mesirov is committed to the development of practical, accessible software tools to bring these methods to the general biomedical research community. Her tools support over a million users worldwide.

Mesirov joined Sanford Burnham Prebys Medical Discovery Institute in July of 2026 as Distinguished Professor, Senior Vice President for Computational Science, and a member of the Sanford Burnham Prebys NCI-Designated Cancer Center. As Senior Vice President, she works with Institute leadership to develop overall computational science strategies, coordinating projects among the Institute’s four disease-specific centers and two technology-enabling centers and advancing overall progress and implementation of computational sciences, including the rapid development and use of artificial intelligence.

Prior to joining Sanford Burnham Prebys, Jill Mesirov was Associate Vice Chancellor for Computational Health Sciences and Professor of Medicine at UC San Diego School of Medicine. As Associate Vice Chancellor, Mesirov was responsible for the overarching strategy for computational health sciences and research computing at UC San Diego School of Medicine. She was also a member of the UCSD Moores Cancer Center, where she served as co-lead for the structural and functional genomics research program.

Before moving to San Diego in 2015, Mesirov was Associate Director and Chief Informatics Officer at the Broad Institute of MIT and Harvard, formerly the Whitehead Institute/MIT Center for Genome Research, where she directed the Computational Biology and Bioinformatics Program and was a member of the Cancer Program steering committee. She previously served as manager of computational biology and bioinformatics in the Healthcare/Pharmaceutical Solutions Organization of IBM, director of research at Thinking Machines Corporation and has also held positions in the mathematics department at the University of California at Berkeley and served as Associate Executive Director of the American Mathematical Society.

Mesirov is a fellow of the American Association for the Advancement of Science (AAAS), the American Mathematical Society (AMS), the International Society for Computational Biology (ISCB), and the Association for Women in Mathematics (AWM) where she formerly served as president. Her awards include the Children’s Brain Tumor Network Open Science Award and the WTA Women Breaking Barriers Award.

Mesirov received her B.A. in mathematics from the University of Pennsylvania. She earned her M.A. and Ph.D. in mathematics from Brandeis University.

LAB MEMBERS


Mesirov Group
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Michael Reich

Consultant

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Helga Thorvaldsdóttir
(Broad Institute)

Project Manager
Sr. Software Architect

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Jim Robinson, Ph.D.

Consultant

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David Eby

Consultant

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Doug Turner

Consultant

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Anthony Castanza, Ph.D.

MSigDB Curator


STUDENTS & INTERNS

Name Program Project Title/Description Date
Margaret Jones Undergraduate Intern (BS/MS Candidate) Apr 2024 - Jun 2026
Aditya Parmar Undergraduate Intern Jun 2024 - Jun 2026
Saanvi Ranadive Undergraduate Intern Jan 2025 - Jun 2026
Garvit Agarwal Undergraduate Intern Apr 2025 - Jun 2026
Razeen Khan Undergraduate Intern Apr 2025 - Jun 2026
Shania Bu Undergraduate Intern Apr 2025 - Jun 2026
Bo-Zhi Huang High School Intern (Westview High School, Poway) Sept 2025 - Jun 2026
Pragna Guntupalli Undergraduate Intern Sept 2025 - Jun 2026
Keyi Yu Undergraduate Intern Jan 2025 - Sept 2025
Jacob Lee Undergraduate Intern/Regents Scholar Jun 2023 - Jun 2025
Eugene Kong Undergraduate Intern Sept 2024 - Jun 2025
Aditya Kakarla Undergraduate Intern Jan 2025 - Jun 2025
Grace Wang High School Intern Gene set refinement Jun 2022 - Sept 2024
Omar Halawa Undergraduate Intern Sept 2022 - Sept 2024
Justin Lee Undergraduate Intern IGV videos, GenePattern Module Development Sept 2021 - Jun 2024
Julia Kononova Undergraduate Intern Jan 2024 - Jun 2024
Gayathri Donepudi Undergraduate Intern Gene set refinement Jan 2022 - Dec 2023
Ethan Shapiro Undergraduate Intern Apr 2023 - Sept 2023
Yuxin Guo Undergraduate Intern Apr 2023 - Sept 2023
Shanqing Wang Undergraduate Intern AA on St Jude, ecDNA pan-cancer Jan 2020 - Jun 2023
Romella Sagatellian Undergraduate Intern Jan 2021 - Jun 2023
Aditi Dutta Undergraduate Intern AA on Cavatica, ecDNA pan-cancer Sept 2021 - Jun 2023
Isabel Wang Undergraduate Intern Sept 2022 - Mar 2023
Rongyu Ma Undergraduate Intern Single cell ssGSEA Apr 2021 - Dec 2022
Willard Ford Undergraduate Intern Sept 2022 - Dec 2022
Ana Brenda Ortega Morales ENLACE Generating a repository of experimental data for evaluating algorithms for gene set enrichment analysis Jun 2022 - Aug 2022
Hindra Gutiérrez Guerrero ENLACE Generating a repository of experimental data for evaluating algorithms for gene set enrichment analysis Jun 2022 - Aug 2022
Edwin Huang Undergraduate Intern GenePattern (Amplicon Architect) Sept 2021 - Jun 2022
Anirudh Anand High School Intern RCMB56 single cell analysis Apr 2022 - Jun 2022
Kevin Liu Undergraduate Intern GenePattern modules/visualizers Apr 2022 - Jun 2022
Tanishq Gupta Undergraduate Intern GenePattern notebooks (ATAC-seq) Apr 2022 - Jun 2022
Ethan Dinh-Luong Undergraduate Intern Sept 2021 - Mar 2022
Teresa Lee Undergraduate Intern Sept 2021 - Mar 2022
Deepak Ahire Undergraduate Intern Sept 2021 - Dec 2021
Miranda Song Undergraduate Intern Jun 2020 - Sept 2021
Aaditya Prasad Undergraduate Intern MICAL2 in pancreatic cancer Jun 2021 - Sept 2021
Trevor Jones NCI CSBC Intern (Carleton College) Jun 2021 - Sept 2021
Yingxi Lin UCSD Bioinformatics Jan 2020 - Jun 2021
Jonathan Zamora UCSD Computer Science Creating a Seurat Module Suite in GenePattern Apr 2020 - Mar 2021
Davika Torvi Undergraduate Intern Sept 2020 - Mar 2021
James Ni High School Intern Jun 2019 - Dec 2020
Kyle Liu UCSD Statistics Jan 2020 - Dec 2020
Yue "Alison" Wang Undergraduate Intern Jan 2020 - Dec 2020
Eric Duong Undergraduate Intern Jun 2020 - Sept 2020
Jacob Gill STARS Jun - August 2020
Gabriel Diaz ENLACE Jun - August 2019
Hugo Gomez ENLACE Jun - August 2019
Mengyi (Miko) Liu UCSD Bioinformatics Comparing batch correction algorithms for meta-analysis of single cell RNA-seq data Sept 2018 - Jun 2019
John Yin UCSD Mathematics Applying NMF with network regularization to transcriptomic data Jan 2019 - Jun 2019
Chengze Shen Undergraduate Intern Apr 2018 - Sept 2018
Alejandra Ramos ENLACE Developing a suite of TCGA Data Importer Notebooks Jun - August 2018
Marylu Villa R. ENLACE Developing a suite of TCGA Data Importer Notebooks Jun - August 2018
Xavier Gonzales Summer Internship Applying NMF with various constraints to transcriptomic data July - August 2018
Andy Zhang Regents Scholar Sept 2016 - Jun 2018
Isaac Shanley Undergraduate Intern Helped develop IGV Reports Sept 2017 - Jun 2018
Taylor Cavzos Undergraduate Mentee Jan 2016 - Jun 2017
Aaron Patel Undergraduate Intern Jun 2016 - Jun 2017
Katherine Niklason (Medetugul-Ernar) MED 199 Undergraduate Research Student Jan 2017 - Mar 2017

LAB ALUMNI

Name Title Institute Years Worked
Ted Liefeld Lead Software Architect Whitehead Institute, Broad Institute, UCSD Sept 2003 - Jun 2026
Thorin Tabor Sr. Software Engineer Broad Institute, UCSD Jan 2011 - Jun 2026
Sara Morimoto Administrative Assistant UCSD Aug 2017 - Jun 2026
Alex Wenzel, Ph.D. Ph.D. Candidate, Postdoctoral Researcher UCSD Jan 2018 - Jun 2026
Sangwoo Kim, MD Postdoctoral Fellow UCSD Dec 2024 - Jun 2026
Lauren Clubb, Ph.D. Ph.D. Candidate UCSD Sept 2020 - May 2026
Mark Antkowiak, MD Postgraduate Resident Fellow UCSD July 2023 - Aug 2025
Edwin Huang Bioinformatics Programmer UCSD May 2022 - Mar 2025
Forrest Kim Informatics Coordinator UCSD Jan 2017 - Sept 2024
John Jun Bioinformatics Scientist UCSD Aug 2022 - Jan 2024
Sunita Sridhar, MD Postdoctoral Fellow UCSD Aug 2021 - Aug 2023
Owen Chapman, Ph.D. Ph.D. Candidate UCSD Mar 2018 - July 2023
Ashwyn Sharma, MD Postdoctoral Fellow UCSD July 2020 - Jun 2023
Lukas Chavez, Ph.D. Adjunct Assistant Professor UCSD Jan 2019 - Dec 2022
Barbara Hill, Ph.D. Senior Software Test Engineer Broad Institute, UCSD Aug 2007 - Apr 2022
Edwin Juarez, Ph.D. Bioinformatics Scientist UCSD Jun 2017 - March 2022
Saumya Tiwari, Ph.D. Postdoctoral Fellow (co-Mentor, Damyon Runyon QB Fellowship; Mo Jain Lab) UCSD 2020
James Jensen, Ph.D. Ph.D. Candidate, Postdoctoral Fellow UCSD Mar 2016 - 2019
Dan Carlin, Ph.D. Postdoctoral Fellow UCSD 2016 - 2019
Peter Carr Software Engineer III Broad Institute, UCSD Aug 2007 - May 2019
Clarence Mah Associate Computational Biologist UCSD Sept 2016 - Aug 2018
Arthur Liberzon, Ph.D. Bioinformatics Scientist & MSigDB Curator (Broad Institute) Broad Institute, UCSD Apr 2007 - May 2018
Marco Ocana Consultant Broad Institute, UCSD Nov 2010 - Dec 2017
Sara Garamszegi, Ph.D. Bioinformatics Scientist (Broad Institute) Broad Institute, UCSD Jun 2014 - Mar 2017
Kassi Kosnicki Associate Computational Biologist UCSD Sept 2016 - Feb 2017
Marc-Danie Nazaire Software Engineer Broad Institute, UCSD Jul 2006 - Apr 2016
Felix Wu Associate Computational Biologist Broad Institute, UCSD Jun 2014 - Mar 2016
Pablo Tamayo, Ph.D. Senior Computational Biologist Whitehead Institute, Broad Institute, UCSD Dec 1997 - Aug 2015
Jacob Silterra Software Engineer Broad Institute, UCSD Dec 2011 - Aug 2015
Jared Nedzel Senior Software Engineer I Broad Institute, UCSD Sept 2006 - Jul 2015
DK Jang Software Engineer III Broad Institute, UCSD Nov 2008 - Jul 2015
Soo-Hee Lee Technical Writer Broad Institute May 2014 - Apr 2015
Chet Birger Principal Software Engineer Broad Institute Jun 2012 - Jan 2015
Jon Bistline Informatics Coordinator Broad Institute Apr 2006 - Nov 2014
Reid Pinchback Consultant Broad Institute Jan 2008 - Sept 2014
Catherine Stein Consultant Broad Institute Apr 2012 - Apr 2014
Diego Ribera Associate Computational Biologist Broad Institute Jul 2011 - Aug 2013
Judy McLaughlin Technical Writer Broad Institute Jun 2012 - Jun 2013
Heidi Kuehn Technical Writer Broad Institute Jul 2009 - Oct 2012
Chris Williams Associate Computational Biologist Broad Institute Sept 2010 - May 2012
Don Roby Consultant Broad Institute Nov 2010 - May 2011
Yan Vigneault Software Engineer III Broad Institute Jul 2010 - Sept 2010
Juan Ramirez Software Engineer III Broad Institute Oct 2009 - Jul 2010
Yan Ding Software Engineer III Broad Institute Aug 2009 - Apr 2010
Martin Deacutis Consultant Broad Institute Oct 2009 - Apr 2010
Matthew Wrobel Software Engineer III Broad Institute Nov 2005 - Nov 2009
Qing Gao Software Engineer III Broad Institute Jul 2006 - Nov 2009
Josh Gould Senior Software Engineer I Broad Institute Oct 2003 - Apr 2009
Kenneth Njendu Software Engineer II Broad Institute Sept 2008 - Mar 2009
Elijah Flakes Consultant Broad Institute Nov 2007 - Nov 2008
Rebecca Fagan Consultant Broad Institute Jun 2006 - Oct 2008
David Twomey Senior Software Engineer I Broad Institute Jul 2005 - Jan 2008
Alan Su Software Engineer I Broad Institute Feb 2006 - Jun 2006
Charlotte Henson Informatics Coordinator Broad Institute Nov 2003 - Nov 2005
Julian Fowler Software Engineer I Whitehead Institute Jan 2000 - Dec 2002