Distinguished Professor and Senior Vice President for Computational Science
Sanford Burnham Prebys Discovery Institute
Jill Mesirov is a computational scientist who has spent many years working in the area of high-performance computing on problems that arise in science, engineering, and business applications. Her research focuses on cancer genomics applying machine-learning methods to functional data derived from patient tumors. The lab analyzes this molecular data to determine the underlying biological mechanisms of specific tumor subtypes, to stratify patients according to their relative risks of relapse, and to identify candidate treatments. In addition, Mesirov is committed to the development of practical, accessible software tools to bring these methods to the general biomedical research community. Her tools support over a million users worldwide.
Mesirov joined Sanford Burnham Prebys Medical Discovery Institute in July of 2026 as Distinguished Professor, Senior Vice President for Computational Science, and a member of the Sanford Burnham Prebys NCI-Designated Cancer Center. As Senior Vice President, she works with Institute leadership to develop overall computational science strategies, coordinating projects among the Institute’s four disease-specific centers and two technology-enabling centers and advancing overall progress and implementation of computational sciences, including the rapid development and use of artificial intelligence.
Prior to joining Sanford Burnham Prebys, Jill Mesirov was Associate Vice Chancellor for Computational Health Sciences and Professor of Medicine at UC San Diego School of Medicine. As Associate Vice Chancellor, Mesirov was responsible for the overarching strategy for computational health sciences and research computing at UC San Diego School of Medicine. She was also a member of the UCSD Moores Cancer Center, where she served as co-lead for the structural and functional genomics research program.
Before moving to San Diego in 2015, Mesirov was Associate Director and Chief Informatics Officer at the Broad Institute of MIT and Harvard, formerly the Whitehead Institute/MIT Center for Genome Research, where she directed the Computational Biology and Bioinformatics Program and was a member of the Cancer Program steering committee. She previously served as manager of computational biology and bioinformatics in the Healthcare/Pharmaceutical Solutions Organization of IBM, director of research at Thinking Machines Corporation and has also held positions in the mathematics department at the University of California at Berkeley and served as Associate Executive Director of the American Mathematical Society.
Mesirov is a fellow of the American Association for the Advancement of Science (AAAS), the American Mathematical Society (AMS), the International Society for Computational Biology (ISCB), and the Association for Women in Mathematics (AWM) where she formerly served as president. Her awards include the Children’s Brain Tumor Network Open Science Award and the WTA Women Breaking Barriers Award.
Mesirov received her B.A. in mathematics from the University of Pennsylvania. She earned her M.A. and Ph.D. in mathematics from Brandeis University.
Consultant
Project Manager
Sr. Software Architect
Consultant
Consultant
Consultant
MSigDB Curator
| Name | Program | Project Title/Description | Date |
|---|---|---|---|
| Margaret Jones | Undergraduate Intern (BS/MS Candidate) | Apr 2024 - Jun 2026 | |
| Aditya Parmar | Undergraduate Intern | Jun 2024 - Jun 2026 | |
| Saanvi Ranadive | Undergraduate Intern | Jan 2025 - Jun 2026 | |
| Garvit Agarwal | Undergraduate Intern | Apr 2025 - Jun 2026 | |
| Razeen Khan | Undergraduate Intern | Apr 2025 - Jun 2026 | |
| Shania Bu | Undergraduate Intern | Apr 2025 - Jun 2026 | |
| Bo-Zhi Huang | High School Intern (Westview High School, Poway) | Sept 2025 - Jun 2026 | |
| Pragna Guntupalli | Undergraduate Intern | Sept 2025 - Jun 2026 | |
| Keyi Yu | Undergraduate Intern | Jan 2025 - Sept 2025 | |
| Jacob Lee | Undergraduate Intern/Regents Scholar | Jun 2023 - Jun 2025 | |
| Eugene Kong | Undergraduate Intern | Sept 2024 - Jun 2025 | |
| Aditya Kakarla | Undergraduate Intern | Jan 2025 - Jun 2025 | |
| Grace Wang | High School Intern | Gene set refinement | Jun 2022 - Sept 2024 |
| Omar Halawa | Undergraduate Intern | Sept 2022 - Sept 2024 | |
| Justin Lee | Undergraduate Intern | IGV videos, GenePattern Module Development | Sept 2021 - Jun 2024 |
| Julia Kononova | Undergraduate Intern | Jan 2024 - Jun 2024 | |
| Gayathri Donepudi | Undergraduate Intern | Gene set refinement | Jan 2022 - Dec 2023 |
| Ethan Shapiro | Undergraduate Intern | Apr 2023 - Sept 2023 | |
| Yuxin Guo | Undergraduate Intern | Apr 2023 - Sept 2023 | |
| Shanqing Wang | Undergraduate Intern | AA on St Jude, ecDNA pan-cancer | Jan 2020 - Jun 2023 |
| Romella Sagatellian | Undergraduate Intern | Jan 2021 - Jun 2023 | |
| Aditi Dutta | Undergraduate Intern | AA on Cavatica, ecDNA pan-cancer | Sept 2021 - Jun 2023 |
| Isabel Wang | Undergraduate Intern | Sept 2022 - Mar 2023 | |
| Rongyu Ma | Undergraduate Intern | Single cell ssGSEA | Apr 2021 - Dec 2022 |
| Willard Ford | Undergraduate Intern | Sept 2022 - Dec 2022 | |
| Ana Brenda Ortega Morales | ENLACE | Generating a repository of experimental data for evaluating algorithms for gene set enrichment analysis | Jun 2022 - Aug 2022 |
| Hindra Gutiérrez Guerrero | ENLACE | Generating a repository of experimental data for evaluating algorithms for gene set enrichment analysis | Jun 2022 - Aug 2022 |
| Edwin Huang | Undergraduate Intern | GenePattern (Amplicon Architect) | Sept 2021 - Jun 2022 |
| Anirudh Anand | High School Intern | RCMB56 single cell analysis | Apr 2022 - Jun 2022 |
| Kevin Liu | Undergraduate Intern | GenePattern modules/visualizers | Apr 2022 - Jun 2022 |
| Tanishq Gupta | Undergraduate Intern | GenePattern notebooks (ATAC-seq) | Apr 2022 - Jun 2022 |
| Ethan Dinh-Luong | Undergraduate Intern | Sept 2021 - Mar 2022 | |
| Teresa Lee | Undergraduate Intern | Sept 2021 - Mar 2022 | |
| Deepak Ahire | Undergraduate Intern | Sept 2021 - Dec 2021 | |
| Miranda Song | Undergraduate Intern | Jun 2020 - Sept 2021 | |
| Aaditya Prasad | Undergraduate Intern | MICAL2 in pancreatic cancer | Jun 2021 - Sept 2021 |
| Trevor Jones | NCI CSBC Intern (Carleton College) | Jun 2021 - Sept 2021 | |
| Yingxi Lin | UCSD Bioinformatics | Jan 2020 - Jun 2021 | |
| Jonathan Zamora | UCSD Computer Science | Creating a Seurat Module Suite in GenePattern | Apr 2020 - Mar 2021 |
| Davika Torvi | Undergraduate Intern | Sept 2020 - Mar 2021 | |
| James Ni | High School Intern | Jun 2019 - Dec 2020 | |
| Kyle Liu | UCSD Statistics | Jan 2020 - Dec 2020 | |
| Yue "Alison" Wang | Undergraduate Intern | Jan 2020 - Dec 2020 | |
| Eric Duong | Undergraduate Intern | Jun 2020 - Sept 2020 | |
| Jacob Gill | STARS | Jun - August 2020 | |
| Gabriel Diaz | ENLACE | Jun - August 2019 | |
| Hugo Gomez | ENLACE | Jun - August 2019 | |
| Mengyi (Miko) Liu | UCSD Bioinformatics | Comparing batch correction algorithms for meta-analysis of single cell RNA-seq data | Sept 2018 - Jun 2019 |
| John Yin | UCSD Mathematics | Applying NMF with network regularization to transcriptomic data | Jan 2019 - Jun 2019 |
| Chengze Shen | Undergraduate Intern | Apr 2018 - Sept 2018 | |
| Alejandra Ramos | ENLACE | Developing a suite of TCGA Data Importer Notebooks | Jun - August 2018 |
| Marylu Villa R. | ENLACE | Developing a suite of TCGA Data Importer Notebooks | Jun - August 2018 |
| Xavier Gonzales | Summer Internship | Applying NMF with various constraints to transcriptomic data | July - August 2018 |
| Andy Zhang | Regents Scholar | Sept 2016 - Jun 2018 | |
| Isaac Shanley | Undergraduate Intern | Helped develop IGV Reports | Sept 2017 - Jun 2018 |
| Taylor Cavzos | Undergraduate Mentee | Jan 2016 - Jun 2017 | |
| Aaron Patel | Undergraduate Intern | Jun 2016 - Jun 2017 | |
| Katherine Niklason (Medetugul-Ernar) | MED 199 Undergraduate Research Student | Jan 2017 - Mar 2017 |
| Name | Title | Institute | Years Worked |
|---|---|---|---|
| Ted Liefeld | Lead Software Architect | Whitehead Institute, Broad Institute, UCSD | Sept 2003 - Jun 2026 |
| Thorin Tabor | Sr. Software Engineer | Broad Institute, UCSD | Jan 2011 - Jun 2026 |
| Sara Morimoto | Administrative Assistant | UCSD | Aug 2017 - Jun 2026 |
| Alex Wenzel, Ph.D. | Ph.D. Candidate, Postdoctoral Researcher | UCSD | Jan 2018 - Jun 2026 |
| Sangwoo Kim, MD | Postdoctoral Fellow | UCSD | Dec 2024 - Jun 2026 |
| Lauren Clubb, Ph.D. | Ph.D. Candidate | UCSD | Sept 2020 - May 2026 |
| Mark Antkowiak, MD | Postgraduate Resident Fellow | UCSD | July 2023 - Aug 2025 |
| Edwin Huang | Bioinformatics Programmer | UCSD | May 2022 - Mar 2025 |
| Forrest Kim | Informatics Coordinator | UCSD | Jan 2017 - Sept 2024 |
| John Jun | Bioinformatics Scientist | UCSD | Aug 2022 - Jan 2024 |
| Sunita Sridhar, MD | Postdoctoral Fellow | UCSD | Aug 2021 - Aug 2023 |
| Owen Chapman, Ph.D. | Ph.D. Candidate | UCSD | Mar 2018 - July 2023 |
| Ashwyn Sharma, MD | Postdoctoral Fellow | UCSD | July 2020 - Jun 2023 |
| Lukas Chavez, Ph.D. | Adjunct Assistant Professor | UCSD | Jan 2019 - Dec 2022 |
| Barbara Hill, Ph.D. | Senior Software Test Engineer | Broad Institute, UCSD | Aug 2007 - Apr 2022 |
| Edwin Juarez, Ph.D. | Bioinformatics Scientist | UCSD | Jun 2017 - March 2022 |
| Saumya Tiwari, Ph.D. | Postdoctoral Fellow (co-Mentor, Damyon Runyon QB Fellowship; Mo Jain Lab) | UCSD | 2020 |
| James Jensen, Ph.D. | Ph.D. Candidate, Postdoctoral Fellow | UCSD | Mar 2016 - 2019 |
| Dan Carlin, Ph.D. | Postdoctoral Fellow | UCSD | 2016 - 2019 |
| Peter Carr | Software Engineer III | Broad Institute, UCSD | Aug 2007 - May 2019 |
| Clarence Mah | Associate Computational Biologist | UCSD | Sept 2016 - Aug 2018 |
| Arthur Liberzon, Ph.D. | Bioinformatics Scientist & MSigDB Curator (Broad Institute) | Broad Institute, UCSD | Apr 2007 - May 2018 |
| Marco Ocana | Consultant | Broad Institute, UCSD | Nov 2010 - Dec 2017 |
| Sara Garamszegi, Ph.D. | Bioinformatics Scientist (Broad Institute) | Broad Institute, UCSD | Jun 2014 - Mar 2017 |
| Kassi Kosnicki | Associate Computational Biologist | UCSD | Sept 2016 - Feb 2017 |
| Marc-Danie Nazaire | Software Engineer | Broad Institute, UCSD | Jul 2006 - Apr 2016 |
| Felix Wu | Associate Computational Biologist | Broad Institute, UCSD | Jun 2014 - Mar 2016 |
| Pablo Tamayo, Ph.D. | Senior Computational Biologist | Whitehead Institute, Broad Institute, UCSD | Dec 1997 - Aug 2015 |
| Jacob Silterra | Software Engineer | Broad Institute, UCSD | Dec 2011 - Aug 2015 |
| Jared Nedzel | Senior Software Engineer I | Broad Institute, UCSD | Sept 2006 - Jul 2015 |
| DK Jang | Software Engineer III | Broad Institute, UCSD | Nov 2008 - Jul 2015 |
| Soo-Hee Lee | Technical Writer | Broad Institute | May 2014 - Apr 2015 |
| Chet Birger | Principal Software Engineer | Broad Institute | Jun 2012 - Jan 2015 |
| Jon Bistline | Informatics Coordinator | Broad Institute | Apr 2006 - Nov 2014 |
| Reid Pinchback | Consultant | Broad Institute | Jan 2008 - Sept 2014 |
| Catherine Stein | Consultant | Broad Institute | Apr 2012 - Apr 2014 |
| Diego Ribera | Associate Computational Biologist | Broad Institute | Jul 2011 - Aug 2013 |
| Judy McLaughlin | Technical Writer | Broad Institute | Jun 2012 - Jun 2013 |
| Heidi Kuehn | Technical Writer | Broad Institute | Jul 2009 - Oct 2012 |
| Chris Williams | Associate Computational Biologist | Broad Institute | Sept 2010 - May 2012 |
| Don Roby | Consultant | Broad Institute | Nov 2010 - May 2011 |
| Yan Vigneault | Software Engineer III | Broad Institute | Jul 2010 - Sept 2010 |
| Juan Ramirez | Software Engineer III | Broad Institute | Oct 2009 - Jul 2010 |
| Yan Ding | Software Engineer III | Broad Institute | Aug 2009 - Apr 2010 |
| Martin Deacutis | Consultant | Broad Institute | Oct 2009 - Apr 2010 |
| Matthew Wrobel | Software Engineer III | Broad Institute | Nov 2005 - Nov 2009 |
| Qing Gao | Software Engineer III | Broad Institute | Jul 2006 - Nov 2009 |
| Josh Gould | Senior Software Engineer I | Broad Institute | Oct 2003 - Apr 2009 |
| Kenneth Njendu | Software Engineer II | Broad Institute | Sept 2008 - Mar 2009 |
| Elijah Flakes | Consultant | Broad Institute | Nov 2007 - Nov 2008 |
| Rebecca Fagan | Consultant | Broad Institute | Jun 2006 - Oct 2008 |
| David Twomey | Senior Software Engineer I | Broad Institute | Jul 2005 - Jan 2008 |
| Alan Su | Software Engineer I | Broad Institute | Feb 2006 - Jun 2006 |
| Charlotte Henson | Informatics Coordinator | Broad Institute | Nov 2003 - Nov 2005 |
| Julian Fowler | Software Engineer I | Whitehead Institute | Jan 2000 - Dec 2002 |